RT Journal Article
T1 MangoBase: a genomics portal and gene expression atlas for Mangifera indica
A1 Gómez-Ollé, Aynhoa
A1 Bullones, Amanda
A1 Hormaza Urroz, José Ignacio
A1 Mueller, Lukas A.
A1 Fernández-Pozo, Noé
K1 Mangos - Genética -  Proceso de datos
K1 Genómica - Proceso de datos
AB Mango (Mangifera indica L.) (2n = 40) is a member of the Anacardiaceae family, which was domesticated at least 4000 years ago in Asia. Mangoes are delicious fruits with great nutritional value. They are one of the major fruit crops worldwide, cultivated in more than 100 countries, with a production of more than 40 million tons. Recently the genome sequences of several mango varieties have been released, but there are no bioinformatics platforms dedicated to mango genomics and breeding to host mango omics data. Here, we present MangoBase, a web portal dedicated to mango genomics, which provides multiple interactive bioinformatics tools, sequences, and annotations to analyze, visualize, and download omics data related to mango. Additionally, MangoBase includes a gene expression atlas with 12 datasets and 80 experiments representing some of the most significant mango RNA-seq experiments published to this date. These experiments study mango fruit ripening in several cultivars with different pulp firmness and sweetness or peel coloration, and other experiments also study hot water postharvest treatment, infection with C. gloeosporioides, and the main mango tree organ tissues
PB MDPI
YR 2023
FD 2023-03-10
LK https://hdl.handle.net/10630/26789
UL https://hdl.handle.net/10630/26789
LA eng
NO Gómez-Ollé A, Bullones A, Hormaza JI, Mueller LA, Fernandez-Pozo N. MangoBase: A Genomics Portal and Gene Expression Atlas for Mangifera indica. Plants. 2023; 12(6):1273. https://doi.org/10.3390/plants12061273
NO This research was funded by Junta de Andalucía (EMERGIA20_00286, and P18-RT-3272), and by CIN/AEI/10.13039/501100011033 (RYC2020-030219-I, PID2021-125805OA-I00, 20224AT004, and PID2019-109566RB-I00).Partial funding for open access charge: Universidad de Málaga
DS RIUMA. Repositorio Institucional de la Universidad de Málaga
RD 20 ene 2026