RT Journal Article
T1 OliveAtlas: a gene expression atlas tool for olea europaea
A1 Bullones, Amanda
A1 Castro, Antonio Jesús
A1 Lima-Cabello, Elena
A1 Alché, Juan de Dios
A1 Luque, Francisco
A1 Claros-Díaz, Manuel Gonzalo
A1 Fernández-Pozo, Noé
K1 Olivos -- Mediterráneo (Región) -- Atlas -- Recursos en Internet
K1 Olivicultura -- Mediterráneo (Región) -- Atlas -- Recursos en Internet
AB The olive (Olea europaea L.) is an ancient crop of great importance in the Mediterranean basin due to the production of olive oil and table olives, which are important sources of fat and have benefits for human health. This crop is expanding and increasing its production worldwide and five olive genomes have recently been sequenced, representing a wild olive and important cultivars in terms of olive oil production, intensive agriculture, and adaptation to the East Asian climate. However, few bioinformatic and genomic resources are available to assist olive research and breeding, and there are no platforms to query olive gene expression data. Here, we present OliveAtlas, an interactive gene expression atlas for olive with multiple bioinformatics tools and visualization methods, enabling multiple gene comparison, replicate inspection, gene set enrichment, and data downloading. It contains 70 RNA-seq experiments, organized in 10 data sets representing the main olive plant organs, the pollen germination and pollen tube elongation process, and the response to a collection of biotic and abiotic stresses, among other experimental conditions. OliveAtlas is a web tool based on easyGDB with expression data based on the ‘Picual’ genome reference and gene annotation.
PB MDPI
YR 2023
FD 2023-03-10
LK https://hdl.handle.net/10630/26613
UL https://hdl.handle.net/10630/26613
LA eng
NO Bullones A, Castro AJ, Lima-Cabello E, Alché JdD, Luque F, Claros MG, Fernandez-Pozo N. OliveAtlas: A Gene Expression Atlas Tool for Olea europaea. Plants. 2023; 12(6):1274. https://doi.org/10.3390/plants12061274
NO Partial funding for open access charge: Universidad de Málaga
DS RIUMA. Repositorio Institucional de la Universidad de Málaga
RD 21 ene 2026