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Listar por autor "Balzerani, Francesco"
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An extended reconstruction of human gut microbiota metabolism of dietary compounds.
Blasco, Telmo; Pérez-Burillo, Sergio; Balzerani, Francesco; Hinojosa Nogueira, Daniel; Lerma Aguilera, Alberto; Pastoriza, Silvia; Cendoya, Xabier; Rubio, Ángel; Gosalbes, María José; Jiménez Hernández, Nuria; Francino, María Pilar; Apaolaza, Íñigo; Rufián-Henares, José Ángel; Planes, Francisco Javier[et al.] (Springer Nature, 2021-08-05)Understanding how diet and gut microbiota interact in the context of human health is a key question in personalized nutrition. Genome-scale metabolic networks and constraint-based modeling approaches are promising to ... -
BN-BacArena: Bayesian network extension of BacArena for the dynamic simulation of microbial communities.
Blasco, Telmo; Balzerani, Francesco; Valcárcel, Luis V; Larrañaga, Pedro; Bielza, Concha; Francino, María Pilar; Rufián-Henares, José Ángel; Planes, Francisco Javier; Pérez-Burillo, Sergio[et al.] (Oxford University Press, 2024-04-30)Motivation Simulating gut microbial dynamics is extremely challenging. Several computational tools, notably the widely used BacArena, enable modeling of dynamic changes in the microbial environment. These methods, however, ... -
Extending PROXIMAL to predict degradation pathways of phenolic compounds in the human gut microbiota.
Balzerani, Francesco; Blasco, Telmo; Pérez-Burillo, Sergio; Valcárcel, Luis V; Hassoun, Soha; Planes, Francisco Javier[et al.] (Springer Nature, 2024-05-27)Despite significant advances in reconstructing genome-scale metabolic networks, the understanding of cellular metabolism remains incomplete for many organisms. A promising approach for elucidating cellular metabolism is ... -
Prediction of degradation pathways of phenolic compounds in the human gut microbiota through enzyme promiscuity methods.
Balzerani, Francesco; Hinojosa-Nogueira, Daniel; Cendoya, Xabier; Blasco, Telmo; Pérez-Burillo, Sergio; Apaolaza, Íñigo; Francino, María Pilar; Rufián-Henares, José Ángel; Planes, Francisco Javier[et al.] (Springer Nature, 2022)The relevance of phenolic compounds in the human diet has increased in recent years, particularly due to their role as natural antioxidants and chemopreventive agents in different diseases. In the human body, phenolic ... -
q2-metnet: QIIME2 package to analyze 16S rRNA data via high-quality metabolic reconstructions of the human gut microbiota.
Balzerani, Francesco; Blasco, Telmo; Pérez-Burillo, Sergio; Francino, María Pilar; Rufián-Henares, José Ángel; Valcárcel, Luis V; Planes, Francisco Javier[et al.] (Oxford University Press, 2024-07-17)Motivation 16S rRNA gene sequencing is the most frequent approach for the characterization of the human gut microbiota. Despite different efforts in the literature, the inference of functional and metabolic interpretations ...