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Boosting Backward Search Throughput for FM-Index Using a Compressed Encoding
Herruzo Ruiz, José Manuel; Gonzalez-Navarro, Sonia; Ibáñez, Pablo; Viñals, Victor; Alastruey-Benedé, Jesús; [et al.] (2019-04-11)The rapid development of DNA sequencing technologies has demanded for com- pressed data structures supporting fast pattern matching queries. FM-index is a widely-used compressed data structure that also supports fast ...