Listar por autor "Perez-Wohlfeil, Esteban"
Mostrando ítems 1-9 de 9
-
Accelerating exhaustive pairwise metagenomic comparisons
Perez-Wohlfeil, Esteban; Torreño Tirado, Óscar; Trelles-Salazar, Oswaldo Rogelio
(Springer, Cham, 2017-08-11)
In this manuscript, we present an optimized and parallel version of our previous work IMSAME, an exhaustive gapped aligner for the pairwise and accurate comparison of metagenomes. Parallelization strategies ... -
Analyzing the differences between reads and contigs when performing a taxonomic assignment comparison in metagenomics
Rodríguez-Brazzarola, Pablo; Perez-Wohlfeil, Esteban; Díaz-del-Pino, Sergio; Holthausen, Ricardo; Trelles-Salazar, Oswaldo Rogelio (Springer, Cham, 2018-03)
Metagenomics is an inherently complex field in which one of the primary goals is to determine the compositional organisms present in an environmental sample. Thereby, diverse tools have been developed that are based on ... -
Flujo de Trabajo para el Análisis Exhaustivo de Metagenomas
(2016-11-29)El desarrollo de nuevas tecnologías de adquisición de datos ha propiciado una enorme disponibilidad de información en casi todos los campos existentes de la investigación científica, permitiendo a la vez una especialización ... -
High Performance Computing for Genomics
(UMA Editorial, 2023)With the thrive of data acquisition methods, computerized research has become increasingly more common. However, in order to match the huge data-processing demands, the design of new algorithms along with their optimization ... -
Irregular alignment of arbitrarily long DNA sequences on GPU
Perez-Wohlfeil, Esteban; Trelles-Salazar, Oswaldo Rogelio; Guil-Mata, Nicolás (Springer Nature, 2022-12-22)
The use of Graphics Processing Units to accelerate computational applications is increasingly being adopted due to its affordability, flexibility and performance. However, achieving top performance comes at the price of ... -
Pairwise and incremental multi-stage alignment of metagenomes: A new proposal
Perez-Wohlfeil, Esteban; Torreño Tirado, Óscar; Trelles-Salazar, Oswaldo Rogelio (Springer, 2017)
Traditional comparisons between metagenomes are often performed using reference databases as intermediary templates from which to obtain distance metrics. However, in order to fully exploit the potential of the information ... -
Towards the intelligent diagnosis of hematological diseases
Díaz-del-Pino, Sergio; Trelles-Martínez, Roberto; Perez-Wohlfeil, Esteban; Trelles-Salazar, Oswaldo Rogelio (2019-11-18)
In traditional medicine, patient diagnosis usually implies an in depth study of its state and symptoms that a specialist has to carry out. The adaptation and customization of the medical treatment to those individual ... -
A workflow-based algorithm for tracing Computational Synteny Blocks along different species
(2019-12-16)La comparación de secuencias de textos es un área de notable relevancia dentro de las Ciencias de la Computación. Existen varios problemas clásicos representativos del área, como el problema de la Subsecuencia Común de ... -
Workflows and service discovery: a mobile device approach
Holthausen, Ricardo; Díaz-del-Pino, Sergio; Perez-Wohlfeil, Esteban; Rodríguez-Brazzarola, Pablo; Trelles-Salazar, Oswaldo Rogelio (Springer, Cham, 2018-03)
Bioinformatics has moved from command-line standalone programs to web-service based environments. Such trend has resulted in an enormous amount of online resources which can be hard to find and identify, let alone execute ...