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Listar por autor "Viñals, Victor"
Mostrando ítems 1-2 de 2
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Accelerating Sequence Alignments Based on FM-Index Using the Intel KNL Processor
Herruzo-Ruiz, José Manuel
; González-Navarro, Sonia; Ibáñez, Pablo; Viñals, Victor; Alastruey-Benedé, Jesús; Óscar, Plata[et al.] (IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS,, 2020-07-01)
FM-index is a compact data structure suitable for fast matches of short reads to large reference genomes. The matching algorithm using this index exhibits irregular memory access patterns that cause frequent cache misses, ... -
Boosting Backward Search Throughput for FM-Index Using a Compressed Encoding
Herruzo-Ruiz, José Manuel; González-Navarro, Sonia; Ibáñez, Pablo; Viñals, Victor; Alastruey-Benedé, Jesús; Plata-González, Óscar Guillermo[et al.] (2019-04-11)
The rapid development of DNA sequencing technologies has demanded for com- pressed data structures supporting fast pattern matching queries. FM-index is a widely-used compressed data structure that also supports fast ...