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dc.contributor.advisorGálvez-Rojas, Sergio 
dc.contributor.authorSulser-Larraz, Felipe
dc.contributor.otherLenguajes y Ciencias de la Computaciónes_ES
dc.date.accessioned2017-01-25T12:31:12Z
dc.date.available2017-01-25T12:31:12Z
dc.date.created2016-06
dc.date.issued2017-01-25
dc.identifier.urihttp://hdl.handle.net/10630/12794
dc.description.abstractSequence alignment is becoming increasingly important in our current day and age, and with the rise of coprocessors, it is important to adapt sequence alignment algorithms to the new architecture. Parallelization using SIMD technology has previously been achieved that implement alignment algorithms e efficiently such as SWIPE, described by Rognes in 2011. The Intel Xeon Phi provides a solid architecture which can be used and exploited to maximize the speed in sequence alignment. It is therefore important, to develop algorithms that are able to use efficiently the coprocessor to maximize throughput. A diferent approach and implementation is described and benchmarked. The new program, called BLPhi, aims to reduce execution time by using a filtering method. BLPhi takes advantage of the architecture of the Intel Xeon Phi and provides a parallel solution to sequence alignment using SIMD technology. While exact alignment methods such as the Smith-Waterman are too sensitive for database searching, BLPhi uses a filtering technique that can be adapted to any length given. This gives the user the ability to adapt the search for his needs and may, perhaps, make the search more restrictive. An analysis with current state of the art alignment methods is also presented. We perform speed and accuracy analysis to see the potential that BLPhi has among its competitors.es_ES
dc.language.isospaes_ES
dc.rightsinfo:eu-repo/semantics/openAccesses_ES
dc.subjectTecnología SIMDes_ES
dc.subjectBioinformáticaes_ES
dc.subjectAlgoritmoses_ES
dc.subjectMultiprocesadoreses_ES
dc.subjectInformática - Trabajos Fin de Gradoes_ES
dc.subjectGrado en Ingeniería Informática - Trabajos Fin de Gradoes_ES
dc.subject.otherBioinformaticses_ES
dc.subject.otherIntel Xeon Phies_ES
dc.subject.otherSIMDes_ES
dc.subject.otherAlignmentes_ES
dc.titleAnalysis and implementation of a BLAST-Like algorithm for MIC architectureses_ES
dc.title.alternativeAnálisis e implementación de algoritmo BLAST-Like para arquitecturas MICes_ES
dc.typeinfo:eu-repo/semantics/bachelorThesises_ES
dc.centroE.T.S.I. Informáticaes_ES
dc.rights.ccby-nc-nd*


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