Species distribution and population abundance are keystone patterns in ecology, and currently also in epidemiology. The aggregation of individuals in the population is closely related to distribution and abundance, but they are not totally equivalent patterns. Despite the great efforts made in recent decades to harmonise the sampling protocols used to collect distribution and abundance data, studies regarding the development and testing of aggregation indices are scarce, even when individuals’ aggregation is quite relevant and necessary for the design of effective wildlife management policies. One of the most popular aggregation indices is the overcrowding index (m*), which quantifies the number of individuals per group, and does not, therefore, take into account how the individuals and groups are distributed in a given territorial unit. In this study, we describe and assess a new spatially explicit aggregation index (SAI) in which the distribution of individuals within the group and the groups in the territorial units are included in the formulation. A comparative evaluation of the proposed index was carried out in relation to m*, including a specific assessment of the biological meaning of these indices by relating aggregation indices with pathogen prevalence in a multi-host epidemiological scenario. Our results showed that SAI – but not m* – responded to changes in the aggregation level of individuals in the population in both theoretical scenarios and with real data obtained from a case study. Spatial information is, therefore, required to quantify individuals’ aggregation and the processes that are associated with it. Our results reinforce this idea, since the capacity of SAI to explain the prevalence of animal tuberculosis at a community level was significantly higher than that observed for m*, the latter being to a great extent based in the abundance of individuals in the area.