• Accelerating exhaustive pairwise metagenomic comparisons 

      Pérez-Wohlfeil, Esteban; Torreno, Oscar; Trelles-Salazar, Oswaldo Rogelio (Springer, Cham, 2017-08-11)
      In this manuscript, we present an optimized and parallel version of our previous work IMSAME, an exhaustive gapped aligner for the pairwise and accurate comparison of metagenomes. Parallelization strategies ...
    • Analyzing the differences between reads and contigs when performing a taxonomic assignment comparison in metagenomics 

      Rodríguez-Brazzarola, Pablo; Pérez-Wohlfeil, Esteban; Díaz-del-Pino, Sergio; Holthausen, Ricardo; Trelles-Salazar, Oswaldo Rogelio (Springer, Cham, 2018-03)
      Metagenomics is an inherently complex field in which one of the primary goals is to determine the compositional organisms present in an environmental sample. Thereby, diverse tools have been developed that are based on ...
    • Pairwise and incremental multi-stage alignment of metagenomes: A new proposal 

      Pérez-Wohlfeil, Esteban; Torreno, Oscar; Trelles-Salazar, Oswaldo Rogelio (Springer, 2017)
      Traditional comparisons between metagenomes are often performed using reference databases as intermediary templates from which to obtain distance metrics. However, in order to fully exploit the potential of the information ...
    • Towards the intelligent diagnosis of hematological diseases 

      Díaz-Del-Pino, Sergio; Trelles-Martínez, Roberto; Perez-Wohlfeil, Esteban; Trelles-Salazar, Oswaldo Rogelio (2019-11-18)
      In traditional medicine, patient diagnosis usually implies an in depth study of its state and symptoms that a specialist has to carry out. The adaptation and customization of the medical treatment to those individual ...
    • Workflows and service discovery: a mobile device approach 

      Holthausen, Ricardo; Díaz-Del-Pino, Sergio; Pérez-Wohlfeil, Esteban; Rodríguez-Brazzarola, Pablo; Trelles-Salazar, Oswaldo Rogelio (Springer, Cham, 2018-03)
      Bioinformatics has moved from command-line standalone programs to web-service based environments. Such trend has resulted in an enormous amount of online resources which can be hard to find and identify, let alone execute ...