• Accelerating exhaustive pairwise metagenomic comparisons 

      Pérez-Wohlfeil, Esteban; Torreno, Oscar; Trelles-Salazar, Oswaldo Rogelio (Springer, Cham, 2017-08-11)
      In this manuscript, we present an optimized and parallel version of our previous work IMSAME, an exhaustive gapped aligner for the pairwise and accurate comparison of metagenomes. Parallelization strategies ...
    • Pairwise and incremental multi-stage alignment of metagenomes: A new proposal 

      Pérez-Wohlfeil, Esteban; Torreno, Oscar; Trelles-Salazar, Oswaldo Rogelio (Springer, 2017)
      Traditional comparisons between metagenomes are often performed using reference databases as intermediary templates from which to obtain distance metrics. However, in order to fully exploit the potential of the information ...